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napari workshop
Installing and Opening napari
Visualizing Data in napari
Plugins
Getting started
GUI setup
Python setup & napari installation
Downloading and launching this workshop’s Jupyter notebooks
How to open your notebooks using mybinder.org
Notebooks
Bioimage visualization in Python
Interactive analysis with Jupyter notebook, napari, scikit-image, and scipy
Segmenting nuclei with the
stardist
napari plugin
Mitonet segmentation
Manual annotation
DIY Interactive Segmentation with napari
Using custom colormaps in napari
Introduction to animation with napari
Creating a napari plugin
Index