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napari workshop at Microscopy and Microanalysis 2023
Getting started
GUI setup
Python setup & napari installation
Downloading and launching this workshop’s Jupyter notebooks
Notebooks
Bioimage visualization in Python
Manual annotation
Mitonet segmentation
Introduction to animation with Napari
Additional notebooks
Segmenting nuclei with the
stardist
napari plugin
Interactive analysis with Jupyter notebook, napari, scikit-image, and scipy
Creating a napari plugin
Index