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  • napari workshop at Microscopy and Microanalysis 2023
  • Getting started
    • GUI setup
    • Python setup & napari installation
    • Downloading and launching this workshop’s Jupyter notebooks
  • Notebooks
    • Bioimage visualization in Python
    • Manual annotation
    • Mitonet segmentation
    • Introduction to animation with Napari
  • Additional notebooks
    • Segmenting nuclei with the stardist napari plugin
    • Interactive analysis with Jupyter notebook, napari, scikit-image, and scipy
    • Creating a napari plugin
  • .md

Notebooks

Notebooks#

  • Bioimage visualization in Python
  • Manual annotation
  • Mitonet segmentation
  • Introduction to animation with Napari

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Downloading and launching this workshop’s Jupyter notebooks

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Bioimage visualization in Python

By Kyle Harrington and Kasia Kedziora

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